PrisonPlanet Forum
June 20, 2013, 05:06:02 AM *
Welcome, Guest. Please login or register.

Login with username, password and session length
 
   Home   Help Login Register  
Pages: [1]   Go Down
  Print  
Author Topic: Bacteriophages: A Sinister Synergy. How Viruses Enable Genetic Engineering!  (Read 2838 times)
global_fiefdom
Member
*****
Offline Offline

Posts: 720


« on: November 10, 2011, 01:19:33 PM »

Through this thread, I wanted to bring this to the attention of all here who worry (and rightfully so!) about the safety of vaccines, the prevalence of bio- nano- and micro-warfare, and the idea that funding for innocuous programs like veterinary research could easily be redirected to weapons development programs and eugenics efforts.

The Lambda RED Delivery System:
http://www.ncbi.nlm.nih.gov/pubmed/11445160
FEMS Microbiol Lett. 2001 Jul 10;201(1):9-14.

What makes the bacteriophage lambda Red system useful for genetic engineering: molecular mechanism and biological function.

Quote
Poteete AR.
Source
Department of Molecular Genetics and Microbiology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA. anthony.poteete@umassmed.edu


Abstract

Recent studies have generated interest in the use of the homologous recombination system of bacteriophage lambda for genetic engineering. The system, called Red, consists primarily of three proteins: lambda exonuclease, which processively digests the 5'-ended strand of a dsDNA end; beta protein, which binds to ssDNA and promotes strand annealing; and gamma protein, which binds to the bacterial RecBCD enzyme and inhibits its activities. These proteins induce a 'hyper-rec' state in Escherichia coli and other bacteria, in which recombination events between DNA species with as little as 40 bp of shared sequence occur at high frequency. Red-mediated recombination in the hyper-rec bacterium proceeds via a number of different pathways, and with the involvement of different sets of bacterial proteins, depending in part on the nature of the recombining DNA species. The role of high-frequency double-strand break repair/recombination in the life cycle of the lambdoid phages is discussed.



http://dspace.mit.edu/handle/1721.1/38241
MIT
Genetic engineering of bacteriophage and its applications for biomimetic materials

http://dspace.mit.edu/handle/1721.1/38241
Quote
Title: Genetic engineering of bacteriophage and its applications for biomimetic materials
 
Author: Lee, Soo-Kwan
Other Contributors:
Massachusetts Institute of Technology. Biological Engineering Division.
Advisor: Angela M. Belcher.
Department: Massachusetts Institute of Technology. Biological Engineering Division.Publisher: Massachusetts Institute of Technology
Issue Date: 2006

--------------------------------------------------------------------------------
Filamentous bacteriophage (M13) are excellent biological build block due to their multiple peptide display system including type 8 (complete peptide display at pVIII) and type 83 (complete peptide display at both pVIII and pIII) display systems. Unlike the phagemid systems, the advantage of these systems is that we can get homogenous peptide display on pVIII resulting in uniform placement of selected molecules as well as defined length and width. In this thesis, type 8 and type 83 phage were constructed and used as biological scaffolds to meet the following four specific aims. First, the self-assembly of engineered M13 bacteriophage as a template for Co-Pt crystals was demonstrated. An phage library with an octapeptide library on the major coat protein (pVIII) was used for selection of binders to cobalt ions. Fibrous structures with directionally ordered phage were obtained by interaction with cobalt ions. Co-Pt alloys were synthesized on the fibrous scaffold, and their magnetic properties were characterized. The mineralization showed organized nanoparticles on fibrous bundles with superparamagnetic properties. Second, an in vitro molecular selection method in non-biological conditions for inorganic synthesis was introduced.


http://www.microbiologybytes.com/introduction/GeneticEngineering.html
The Role of Microorganisms in Genetic Engineering



Updated: August 14, 2008
Quote
'Genetic engineering' or genetic manipulation as it should properly be called, relies essentially on the ability to manipulate molecules in vitro. Most biomolecules exist in low concentrations & as complex, mixed populations which it is not possible to work with effectively. This problem was solved in 1970 using the molecular biologist's favourite bug, Escherichia coli , a normally innocuous commensal occupant of the human gut. By inserting a piece of DNA of interest into a vector molecule, i.e. a molecule with a bacterial origin of replication, when the whole recombinant construction is introduced into a bacterial host cell, a large number of identical copies is produced. Together with the rapid growth of bacterial colonies all derived from a single original cell bearing the recombinant vector, in a short time (e.g. a few hours) a large amount of the DNA of interest is produced. This can be purified from contaminating bacterial DNA easily & the resulting product is said to have been 'cloned'.
Most vector molecules were originally derived from one of two sources:

Plasmids - small, autonomously replicating circular pieces of bacterial DNA, which often carry antibiotic-resistance genes.
Bacteriophages (phages) - viruses which infect bacteria.
Rapidly, the original vector molecules were greatly modified to improve their usefulness as vectors, e.g:
Insertion of selectable marker genes to pick out recombinant molecules containing foreign inserts (antibiotic resistance genes & genes which produce a coloured product & therefore a coloured bacterial colony).
Removal or creation of useful sites for cloning
Insertion of sequences which not only allow but greatly increase the expression of cloned genes in bacterial, animal & plant cells.

Vector molecules & cloning are not the only contribution which microorganisms have made to genetic manipulation. The actual task of altering the DNA at a molecular level is carried out by the use of naturally-occurring enzymes - most of which are derived from bacteria or viruses:

Restriction endonucleases: bacteria in natural environments are continually exposed to a dilute 'soup' of foreign DNA released from other organisms which have died & lysed. They are also exposed to bacteriophage DNA. If unable to protect themselves, they would rapidly become infected & killed. The answer to this problem are the many different restriction-modification systems possessed by different groups of bacteria. The enzymes are named after the organisms from which they were originally isolated, e.g:
EcoRI from Escherichia coli
BamHI from Bacillus amyloliquefaciens

These systems operate by enzymes which recognise specific short regions of DNA sequence, which are usually palindromic ('Able was I ere I saw Elba'), e.g:


5' GGATCC 3'
3' CCTAGG 5'

The modification part of the system is responsible for covalently modifying specific nucleotides in this sequence, either by glycosylation or more commonly by methylation of the bases. Modification prevents the corresponding restriction endonuclease (internal cleavage, c.f. exonuclease - degradation form the end of the strand) binding to & cutting the sequence, thus the cells DNA is protected. Foreign DNA (e.g. a bacteriophage genome) is not modified & is thus digested by the restriction enzymes & destroyed. These systems are an effective although not infallible means of protecting bacteria from infection. Molecular biologists use highly purified preparations of R.E.s to cut DNA into specific fragments.

DNA ligase: provides the ability to rejoin cut fragments of DNA & form artificial recombinant molecules. The enzyme utilizes ATP to create new phosphodiester bonds, covalently linking together the ends of DNA strands. The ligase encoded by bacteriophage T4 is particularly valuable since it has very good properties in vitro, such as the ability to join together 'blunt-ended' DNA fragments which allows the joining of otherwise non-compatible fragments, e.g. different restriction enzymes.
Other modifying enzymes (phosphatases, kinases, single-strand specific nucleases, etc): allow precise modifications to pieces of DNA to be made in vitro in order to add, remove or alter the structure of DNA.
RNA modifying enzymes - e.g. exonucleases, RNA ligase, reverse transcriptase. RNA is much more difficult to work with in vitro because the enzymes available are generally not as sophisticated as the set available which modify DNA.
DNA Polymerases: Allow the synthesis of DNA from a pre-existing template in vitro, which can then be used for a variety of purposes, including sequence analysis by chain-termination methods.
Recently, thermostable polymerases have become important, e.g. Taq DNA polymerase from Thermus aquaticus. This bacterium has evolved to grow in hot springs at temperatures which kill most other species. These enzymes allow the amplification of as little as one molecule of DNA into a large amount by means of repeated cycles of melting, primer annealing & extension by the enzyme which is not destroyed by the high temperatures used in this process. This is known as the polymerase chain reaction:



The utility of cloning is partly analytical, i.e it provides the ability to determine the genetic organization of particular regions or whole genomes (the human genome will soon be underway). However, it also facilitates the production of naturally-occurring & artificially-modifed biological products by the expression of cloned genes.
The ability to take a gene from one organism (e.g. man or a tree), clone it in E. coli & express it in another (e.g. a yeast) is dependent on the universality of the genetic code, i.e. the triplets of bases which encode amino acids in proteins:



In fact, the genetic code is not completely universal - there are minor differences in the codons which are recognised & used by different groups of organisms, e.g. animals, plants & bacteria. However, this rarely presents a difficulty expressing foreign genes, & if it does, the means exist to modify particular codons to alternatives coding for the same amino acids which will be recognised by the host organism.
A list of some of the products produced by genetic engineering is given elsewhere, but this is expanding very rapidly & new products of great medical, agricultural, environmental & industrial importance are constantly being produced by this route.



http://fieldquestions.com/2011/06/29/putting-the-germ-into-germany/
Quote
Putting the Germ into Germany

Posted on June 29, 2011 by Glenn


A truly frightening outbreak of E. coli food poisoning appeared in Germany in May.  Within a month it had infected more than 2,400 people in 13 countries across Europe, killing 23.
 
The toxic strain of E. coli is being called O104:H4 and no one is really sure what is behind it.  German authorities first claimed it was probably from contaminated cucumbers imported from Spain… but the evidence was slim, the Spaniards got mad, and the claim was retracted.   (The Spaniards then had to give away 40,000 kilos of legumbres to restore confidence in their products.)
...

MONSANTO

Quote
TheBacteriophages.org --

Control of Bacteriophage in Commercial Microbiology and Fermentation Facilities

by Gregg Bogosian

Monsanto Company
Mail Stop BB3M
700 Chesterfield Parkway
Chesterfield, Missouri

The Bacteriophages, 2nd edition (2006)
Richard Calendar -- Oxford University Press
 
Bibliography: References cited by chapter (pdf file).  
 
Presented by www.phage.org and Stephen T. Abedon
 


Goldman Sachs Connection? Sample Gene Patent Attorney Profile:
Quote
http://www.wtplaw.com/professionals/michael-david-phd


Michael David, Ph.D.

Counsel

Seven Saint Paul Street
 Baltimore, MD 21202-1636
 Phone: 410.347.9424
 Fax: 410.223.4172
mdavid@wtplaw.com
  vCard


Experience
 Co-chair of WTP's Life Sciences Practice
 Represented financial houses, including AEA Investors Inc., Bain Capital, Bank of America, CITI Group, Goldman Sachs, J.P. Morgan, Merrill Lynch and New Mountain Capital, in the analyses of technology and IP assets for acquisitions, loans and debt offerings. The technologies included: drugs, biotechnology, agrobiotechnology, aviation, plastics, software and retail
 Represented companies in selling or acquiring technologies (e.g. Delta and Pine Land, "DPL"; G.E.; Hawker Beechcraft; Berry Plastic; ProdiGene; and many others)
 Provided freedom-to-operate, validity, enforcement and infringements of patents analyses
 Prosecuted patents, with emphasis on Life Science Technologies: gene expression; small molecules; plant genetics; therapeutics; diagnostics; tissue transplants; environmental regulation; drug formulations; material sciences; others
 Represented companies in litigation involving patent rights in domestic and foreign jurisdictions. The litigations included: representation of Delta Pine Australia vs. Bayer Cropscience (successfully settled); successfully represented DPL in a contract dispute with Monsanto (the dispute involved intellectual property and antitrust issues); successfully represented ApplicationsOnline, LLC vs. College Net Inc. (settled)
 Licensing between corporations and transfer of technology from universities; Represented DPL in setting up a joint venture with a major international biotechnology player; ERP software license.


General Information

 
Speaker: Monsanto v. Cefetra BV at the European Court of Justice, panel discussion on Foreign IP Law on Licensing, September 12, 2011, at Whiteford, Taylor & Preston, LLP
 Speaker: Patentability of Natural Products A short talk during press conference by Inter American University (2004) San Juan, Puerto Rico
 Speaker: Patentability of Biological Sequences: the Short and Long of It, IX INTN'L CONGRESS ON PLANT TISSUE AND CELL CULTURE (1998), Jerusalem, Israel
 Speaker: Protection of Plants and Patent Law in U.S. CONFERENCE ON WHEAT BIOLOGY organized by Israel Biotechnology Committee (1997), at Tel Aviv University, Ramat Aviv, Israel
 Co-Author: Marking Products as Patents, Newsletter of the Baltimore Chapter of ACC (2010); Pesticide Producing Bacteria. IN THE ENCYCLOPEDIA OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY, Editor R. E. Meyers (1994); A Stable Escherichia coli - Mycobacterium smegmatis Plasmid Shuttle Vector Containing the Mycobacteriophage D29 Origin. Plasmid 28, (3) 267-71, (1992); Citrate Synthase from Mycobacterium smegmatis. Cloning, sequence determination and expression in Escherichia coli. Biochem. J. 15, 225-34, (1991); Nuclear Genes for Cytochrome c Oxidase Subunits of Neurospora crassa: - Isolation and Characterization of cDNA Clones for Subunits IV, V, VI, and, Possibly, VII. J. Biol. Chem. 261, 869-873, (1986); Phage and Host Genetic Determinants of the Specific Anticodon-loop Cleavages in T4-infected Escherichia coli CTr5x. J. Mol. Biol. 188, 15-22, (1986); Bacteriophage T4 Polynucleotide Kinase and RNA Ligase are Involved in Host tRNA Alteration or Repair. Virology 123, 480-483, (1982); Bacteriophage T4-induced Anticodon-loop Nuclease Detected in a Host Strain Restrictive to RNA Ligase Mutants. Proc. Nat'l. Acad. Sci. U.S.A. 79, 7097-7101, (1982); RNA Ligase Reaction Products in Plasmolysed Escherichia coli Infected by Bacteriophage T4. Proc. Nat'l. Acad. Sci. U.S.A. 76, 5430-5434, (1979).
 

Education
University of Iowa (B.S. 1977)

Weizmann Institute of Science, Rehovot, Israel (M. Sc. 1979)
Weizmann Institute of Science, Rehovot, Israel (Ph.D. 1984)
Massachusetts Institute of Technology (Postdoctoral Fellow 1984)


Logged
global_fiefdom
Member
*****
Offline Offline

Posts: 720


« Reply #1 on: November 12, 2011, 03:57:37 AM »

J Neurovirol. 2010 Mar;16(2):141-9.

Association of autism with polyomavirus infection in postmortem brains.

Lintas C, Altieri L, Lombardi F, Sacco R, Persico AM.


Source

Laboratory of Molecular Psychiatry and Neurogenetics, University Campus Bio-Medico, Rome, Italy.


Abstract

Autism is a highly heritable behavioral disorder. Yet, two decades of genetic investigation have unveiled extremely few cases that can be solely explained on the basis of de novo mutations or cytogenetic abnormalities. Vertical viral transmission represents a nongenetic mechanism of disease compatible with high parent-to-offspring transmission and with low rates of disease-specific genetic abnormalities. Vertically transmitted viruses should be found more frequently in the affected tissues of autistic individuals compared to controls. Our initial step was thus to assess by nested polymerase chain reaction (PCR) and DNA sequence analysis the presence of cytomegalovirus (CMV), Epstein-Barr virus (EBV), herpes simplex virus type 1 (HSV1), herpes simplex virus type 2 (HSV2), human herpes virus 6 (HHV6), BK virus (BKV), JC virus (JCV), and simian virus 40 (SV40) in genomic DNA extracted from postmortem temporocortical tissue (Brodmann areas 41/42) belonging to 15 autistic patients and 13 controls. BKV, JCV, and SV40 combined are significantly more frequent among autistic patients compared to controls (67% versus 23%, respectively; P < .05). The majority of positives yielded archetypal sequences, whereas six patients and two controls unveiled single-base pair changes in two or more sequenced clones. No association is present with the remaining viruses, which are found in relatively few individuals (N <or= 3). Also polyviral infections tend to occur more frequently in the brains of autistic patients compared to controls (40% versus 7.7%, respectively; P = .08). Follow-up studies exploring vertical viral transmission as a possible pathogenetic mechanism in autistic disorder should focus on, but not be limited to, the role of polyomaviruses.


Comment in
J Neurovirol. 2010 Jul;16(4):330-1; author reply 332-3.


PMID: 20345322 [PubMed - indexed for MEDLINE]
Logged
Satyagraha
Global Moderator
Member
*****
Offline Offline

Posts: 8,141



« Reply #2 on: December 12, 2011, 10:55:21 AM »

bump
Logged

"He that would make his own liberty secure must guard even his enemy from oppression; for if he violates this duty he establishes a precedent that will reach to himself."

~ Thomas Paine, A Dissertation on the First Principles of Government, 1795
global_fiefdom
Member
*****
Offline Offline

Posts: 720


« Reply #3 on: December 30, 2011, 12:04:04 PM »

New thread on autism and associated pathology

http://forum.prisonplanet.com/index.php?topic=225555.0
Logged
global_fiefdom
Member
*****
Offline Offline

Posts: 720


« Reply #4 on: December 31, 2011, 01:34:55 PM »

WHY HEP B IS HURTING OUR KIDS BRAINS -- POLYMERASE


J Clin Virol. 2002 Aug;25(2):97-106.
The virological and clinical significance of mutations in the overlapping envelope and polymerase genes of hepatitis B virus.
Torresi J.
Source

Department of Medicine, The University of Melbourne, Royal Melbourne Hospital, Parkville, Vic., Australia. josepht@unimelb.edu.au
Abstract

The potential for hepatitis B virus (HBV) to alter its genome is considerable. This occurs because the virus utilizes a reverse transcription step in replicating the viral genome. Like human immunodeficiency virus, the reverse transcriptase of HBV is error prone and as a consequence of specific selection pressures within a host a population of viral quasispecies emerges. HBV mutants with survival advantages over the wild type virus appear within the selective in vivo environment. Some of these viruses include HBV vaccine escape and anti-viral resistant mutants that have changes in the envelope (S) and polymerase genes, respectively. In addition, the genome of HBV is organised in to overlapping reading frames. The S gene is completely overlapped by the polymerase gene. As a consequence, mutations in the S gene may produce changes in the overlapping polymerase gene. Similarly, mutations in the polymerase gene may produce changes in the S gene. The virological and clinical significance of such overlapping mutations is unclear. However, we have shown that certain mutations in either the S or polymerase gene produce functionally significant changes in the respective overlapping gene. Treatment of chronic hepatitis B carriers with long-term lamivudine (LMV) results in the selection of HBV mutants that are resistant to this nucleoside analogue. The polymerase mutations associated with LMV resistance produce changes in the overlapping S gene and in its envelope protein (hepatitis B small antigen, HBsAg) that results in a reduced antigenicity of the HBsAg protein. The selection of vaccine escape mutants by HBV vaccination or hepatitis B immune globulin is associated with changes in the S gene that are accompanied by mutations in the fingers sub-domain of the polymerase protein. When combined with polymerase mutations that are associated with resistance to LMV the changes within the fingers sub-domain of the viral enzyme behave as compensatory mutations that are able to restore the replication of LMV resistant HBV. The ability to change a viral protein by mutations in an overlapping but unrelated viral gene may produce HBV mutants with altered antigenicity and/or replication and a natural history that may be distinctly different to wild type HBV.

PMID:
    12367644
    [PubMed - indexed for MEDLINE]



Telomerase is an enzyme that adds DNA sequence repeats ("TTAGGG" in all vertebrates) to the 3' end of DNA strands in the telomere regions, which are found at the ends of eukaryotic chromosomes. This region of repeated nucleotide called telomeres contains non-coding DNA material and prevents constant loss of important DNA from chromosome ends. As a result, every time the chromosome is copied only 100-200 nucleotides are lost, which causes no damage to the organism's DNA. Telomerase is a reverse transcriptase that carries its own RNA molecule, which is used as a template when it elongates telomeres, which are shortened after each replication cycle.

The existence of a compensatory shortening of telomere (telomerase) mechanism was first predicted by Soviet biologist Alexey Olovnikov in 1973,[1] who also suggested the telomere hypothesis of aging and the telomere's connections to cancer. Telomerase was discovered by Carol W. Greider and Elizabeth Blackburn in 1984 in the ciliate Tetrahymena.[2] Together with Jack W. Szostak, Greider and Blackburn were awarded the 2009 Nobel Prize in Physiology or Medicine for their discovery.[3]





The protein composition of human telomerase was identified in 2007 by Scott Cohen and his team at the Children's Medical Research Institute in Australia.[4] The high-resolution protein structure of the Tribolium castaneum catalytic subunit of telomerase TERT was decoded in 2008 by Emmanuel Skordalakes and his team at The Wistar Institute in Philadelphia.[11] The structure revealed that the protein consists of four conserved domains (RNA-Binding Domain (TRBD), fingers, palm and thumb), organized into a ring configuration that shares common features with retroviral reverse transcriptases, viral RNA polymerases and bacteriophage B-family DNA polymerases.



http://cwp.embo.org/glc11-02/pdf/10%20Mitchell%20Nat%20Struct%20Mol%20Biol%202010.pdf

Structural basis for telomerase catalytic subunit TERT binding to RNA template and telomeric DNA

Meghan Mitchell1, Andrew Gillis1, Mizuko Futahashi2, Haruhiko Fujiwara2 & Emmanuel Skordalakes1

Telomerase is a specialized DNA polymerase that extends the 3′ ends of eukaryotic linear chromosomes, a process required for genomic stability and cell viability.
Here we present the crystal structure of the active Tribolium castaneum telomerase catalytic subunit, TERT, bound to an RNA-DNA hairpin designed to resemble the putative RNA-templating region and telomeric DNA. The RNA-DNA hybrid adopts a helical structure, docked in the interior cavity of the TERT ring. Contacts between the RNA template and motifs 2 and B′ position the solvent-accessible RNA bases close to the enzyme active site for nucleotide binding and selectivity. Nucleic acid binding induces rigid TERT conformational changes to form a tight catalytic complex. Overall, TERT–RNA template and TERT–telomeric DNA associations are remarkably similar to those observed for retroviral reverse transcriptases, suggesting common mechanistic aspects of DNA replication between the two families of enzymes.



http://www.answers.com/topic/virus

DISINFO ALERT BUT LOOK
Vaccines against smallpox eradicated the illness in 1980. It is believed that it may also be possible to eliminate polio. A recombinant vaccine against hepatitis B virus is now produced in yeast. However, developing effective vaccines to some viruses, including the common cold viruses, HIV-1, herpesviruses, and HPV, is proving very difficult principally due to the existence of many variants. Public health measures, such as mosquito control programs to curb the spread of viral diseases transmitted by these vectors, and safe-sex campaigns to slow the spread of sexually transmitted diseases, can also be effective. Because viruses replicate in cells, drugs that target viruses typically also affect cell functions. These therapeutic agents must be active against the virus while having "acceptable toxicity" to the host organism. The majority of the specific antiviral drugs currently in use target viral enzymes. For example, nucleoside analogues that target viral polymerases are active against HIV and certain herpesviruses.

HOW DO THEY TELL THE DIFFERENCE BETWEEN POLYMERASES THEY DESTROY?
THEY OWE BILLIONS OF DOLLARS TO BILLIONS OF PEOPLE AT THIS POINT! WIKIPEDIA SAID HUMAN POLYMERASES AND BACTERIOPHAGE POLYMERASES ARE ALMOST IDENTICAL.
WE'VE BEEN HAD!!!!!!


Vaccines that destroy polymerase and telomerase DESTROY YOUR DNA

explains aids and almost all neurodegenerative diseases and cancers




http://www.vaccinationnews.com/DailyNews/June2001/SchoolNursesSpeakOut.htm

School Nurses Speak Out on Hepatitis B Vaccine


In our continuing efforts to bring our members information on vaccinations, the staff at Alternative Parenting has reached out the Central District School Nurse Association to request permission to use a letter that they recently sent to congress, here on our site.  The letter is requesting that the mandatory vaccination of young children with the Hep B vaccine be seriously reviewed.  Below is the letter in its entirety.





THE HEP B VIRUS OVER-PRODUCES POLYMERASE IN THE HUMAN BRAIN.
THEN THE HOST IMMUNE SYSTEM DISPATCHES T CELL WHICH KILL INFECTED BRAIN CELLS

HOW DO WE HELP OUR KIDS???
Logged
global_fiefdom
Member
*****
Offline Offline

Posts: 720


« Reply #5 on: December 31, 2011, 01:51:13 PM »

POLYMERASE AND ASTHMA


J Pharmacol Exp Ther. 2004 Dec;311(3):1241-8. Epub 2004 Jul 13.
Inhibition of poly(ADP-ribose) polymerase prevents allergen-induced asthma-like reaction in sensitized Guinea pigs.
Suzuki Y, Masini E, Mazzocca C, Cuzzocrea S, Ciampa A, Suzuki H, Bani D.
Source

Department of Anatomy, Histology, and Forensic Medicine, Section of Histology, University of Florence, Viale G. Pieraccini, 6, I-50139 Florence, Italy.
Abstract

Poly(ADP-ribose) polymerase (PARP) plays an important role in tissue injury in conditions associated with oxidative stress and inflammation. Because asthma is a chronic inflammatory disorder of the airways, we designed the present experimental study to evaluate the effects of PARP inhibition on allergen-induced asthma-like reaction in ovalbumin-sensitized guinea pigs. Cough and dyspnea in response to ovalbumin aerosol were absent in naive guinea pigs, whereas they became severe in the sensitized animals. In the latter ones, ovalbumin aerosol also induced a rapid increase in PARP activity, bronchiolar constriction, pulmonary air space inflation, mast cell degranulation, poly(ADP-ribose) and nitrotyrosine immunostaining, myeloperoxidase activity, and malondialdehyde in lung tissue, as well as a rise in the amounts of nitrites and tumor necrosis factor-alpha in bronchoalveolar lavage fluid. Pretreatment with the PARP inhibitors 3-aminobenzamide (10 mg/kg b.wt.) or 5-aminoisoquinolinone (0.5 mg/kg b.wt.) given i.p. 3 h before ovalbumin challenge significantly reduced the severity of cough and the occurrence of dyspnea and delayed the onset of respiratory abnormalities. Both PARP inhibitors were also able to prevent the above morphological and biochemical changes of lung tissue or bronchoalveolar lavage fluid induced by ovalbumin challenge. Conversely, p-aminobenzoic acid, the inactive analog of 3-aminobenzamide, had no effects.

PMID:
    15254147
    [PubMed - indexed for MEDLINE]

Free full text


http://www.jofamericanscience.org/journals/am-sci/am0706/99_5907am0706_593_599.pdf

Gene Knockout or Pharmacological Inhibition of Poly(ADP-Ribose) Polymerase-1 Prevents Lung Inflammation in a Murine Model of Asthma

   1. A. Hamid Boulares,
   2. Anna J. Zoltoski,
   3. Zaki A. Sherif,
   4. Puneet Jolly,
   5. Donald Massaro and
   6. Mark E. Smulson

+ Author Affiliations

   1.
      Department of Biochemistry and Molecular Biology and Department of Medicine, Lung Laboratory, Georgetown University School of Medicine, Washington, District of Columbia

   1. Address correspondence to: Hamid Boulares, Ph.D., Department of Pharmacology and Experimental Therapeutics, Louisiana State University Health Sciences Center, 1901 Perdido St., Room 5226, New Orleans, LA 70112. E-mail: hboulr@lsuhsc.edu

Abstract

Airway inflammation is a central feature of asthma and chronic obstructive pulmonary disease. Reactive oxygen species (ROS) contribute to inflammation by damaging DNA, which, in turn, results in the activation of poly(ADP-ribose) polymerase-1 (PARP-1) and depletion of its substrate, nicotinamide adenine dinucleotide. Here we show that prevention of PARP-1 activation protects against both ROS-induced airway epithelial cell injury in vitro and airway inflammation in vivo. H2O2 induced the generation of ROS, PARP-1 activation and concomitant nicotinamide adenine dinucleotide depletion, and release of lactate dehydrogenase in A549 human airway epithelial cells. These effects were blocked by the PARP-1 inhibitor 3-aminobenzamide (3-AB). Furthermore, 3-AB inhibited both activation of the proinflammatory transcription factor nuclear factor-κB and expression of the interleukin-8 gene induced by H2O2 in these cells. In a murine model of allergen-induced asthma, 3-AB prevented airway inflammation elicited by ovalbumin. Moreover, PARP-1 knockout mice were resistant to such ovalbumin-induced inflammation. These protective effects were associated with an inhibition of expression of the inducible nitric oxide synthase. These results implicate PARP-1 activation in airway inflammation, and suggest this enzyme as a potential target for the development of new therapeutic strategies in the treatment of asthma as well as other respiratory disorders such as chronic obstructive pulmonary disease.



http://meeting.chestpubs.org/cgi/content/abstract/128/4/147S-c
Asthma Evaluation

Monday, October 31, 2005

2:30 PM - 4:00 PM

PREVALENCE OF MYCOPLASMA PNEUMONIAE INFECTION IN ASTHMATIC ADULTS IN INDIA
Nazima Nisar, PhD *, Randeep Guleria, MD, Arvind K. Singh, MD, Tirlok C. Chawla, PhD, Niranjan Nayak, MD and Nihar R. Biswas, MD

Department of Ocular Pharmacology, Dr. R.P.Centre for Ophthalmic Sciences, All I, New Delhi, India

PURPOSE: Mycoplasma pneumoniae ( M . pneumoniae ), primarily recognized as a causative agent of community acquired pneumonia has recently been linked to asthma pathogenesis. The lack of awareness and appropriate diagnostic facilities handicap the current understanding of their true prevalence in asthma . Polymerase chain reaction (PCR) is emerging as one of the most accurate methods for the rapid identification of M. pneumoniae in asthmatics. The purpose of present study is to see the prevalence of M. pneumoniae in asthmatics using PCR, culture and serology.


http://www.kenes.com/wspid2011/abstracts/pdf/331.pdf

MYCOPLASMA PNEUMONIAE AND ASTHMA IN CHILDREN
S. Kumar1, R.D. Roy1, G.R. Sethi2, S.R. Saigal1
1Department of Microbiology, 2Department of Pediatrics, Maulana Azad Medical College, New
Delhi, India
Background and aims: The etiology of asthma is complex, involving interactions between
genetic susceptibility, allergen exposure, and environmental factors, such as respiratory tract
infections, air pollution, and smoking. The role of Mycoplasma pneumoniae infection as a trigger
for asthma exacerbations is well documented. The aim of the present study was to investigate
role of M pneumoniae in childhood asthma using serology and polymerase chain reaction
(PCR).
Methods: Eighty children for this study were divided into two groups: Group 1 of 50 known
asthmatic children, aged 5-15 years with acute exacerbation and group 2 of 30 asthmatic
children controlled on inhaled corticosteroids. They were investigated for IgM and IgG
antibodies to M pneumoniae by enzyme linked immunosorbant assay and PCR assay to amplify
a 543 base pair P1 adhesion gene fragment applied on nasopharyngeal aspirates.
Results: Twenty one (42%) children in Group 1 and 4(13.3%) controls were positive for IgM
antibodies to M.pneumoniae (p= 0.0118). Ten (20%) children in Group I and 5(16%) in group 2
were positive for IgG antibodies to M.pneumoniae while three (6%) cases documented fourfold
rise in IgG titers. M pneumoniae PCR was positive in 3(6%) children of group 1 and none were
positive in group 2. No significant association of M pneumoniae with clinical features was found.
Conclusions: This study suggests that atypical agents like M pneumoniae may contribute to
asthma exacerbation. Also, treatment with macrolides may be of clinical benefit in patients with
asthma and evidence of M. pneumoniae infection.


http://www.rense.com/general3/genes.htm

Genetic Vaccines & Mycoplasma
From Biowar <biowar@topica.com>
From Rick <rdharrison@compuage.com>
http://www.compuage.com/~rdharrison/Index.html
9-17-00
 
 
The remarks toward the bottom about mycoplasma as a transport medium
for foreign DNA could equally apply to genetic vaccines as well as
offensive biowarfare agents.
 
http://www.sciam.com/1999/0799issue/0799weiner.html
http://www.the-scientist.com/yr1998/mar/research_980316.html
 
 

 
Excerpts from
 
The Ignorant & The Unwarned By Ed Gehrman
 
Nowadays, many diseases can be produced on an industrial scale using readily available resources. Trained technicians are easily able to culture large quantities of bacteria using methods formulated in U.S. bio-warfare labs; over a hundred Department of Defense funded laboratories are operating on campuses or in industrial parks across our nation. Our collective ignorance about participating in bio-warfare research is alarming and our seeming innocence, hypocritical. There are serious consequences in allowing our defense establishment and the scientific community to become involved in this grisly business. Some of the perilous drawbacks are shoddy scientific techniques, risky protocols, and the repressive secrecy that prevents peer review and free exchange of all information. (4)
 
There is a tendency in the scientific community to first ignore and then ridicule opinions that are contrary to prevailing beliefs; but a few balky doctors and health care workers have voiced their concern, often to a deaf public and media. Dr. Alan Cantwell M.D. represents this minority when he states: "Does the government secretly experiment with people? Of course, it does. This is not a paranoid fantasy. There is circumstantial evidence that shows AIDS is a man-made disease with a genetically engineered virus that came out of a cancer virus Bio-warfare laboratory. ...
 
Doctors Garth and Nancy Nicolson are prime examples of what can happen when one questions authority. They have been hounded from prestigious jobs and threatened, both physically and professionally; their labs have been vandalized, irreplaceable specimens destroyed, correspondence intercepted and phones tapped. Why? Because they had the audacity to suggest, and evidence to indicate that many sick gulf war vets are suffering from exposure to a bio-warfare, weaponized organism, a mycoplasma named incognitus.
 
Mycoplasma are the smallest and perhaps the oldest life forms. These cell wall deficient bacteria, one cause of "walking pneumonia", have been implicated in a variety of other "emerging" diseases. A form of mycoplasma, a spiroplasma, is implicated in Mad Cow Disease but is being ignored by most BSE researchers. Multiple Sclerosis, Chronic Fatigue Syndrome, and Alzheimers are also being investigated as possibly caused by mycoplasmic type bacteria. Mycoplasma are thought by many to be rather fragile, but nothing could be further from the truth. They tolerate extreme fluctuations in temperature, lay dormant in the soil for generations and survive the harshest elements; only drano-like chemicals kill them effectively outside the body. Under normal circumstances our immune system efficiently deals with mycoplasmas and other life-threatening bacteria; we evolved from this complicated, membrane enclosed piece of DNA and up until now have developed defenses that keep these critters in check. The new strains seem different. Difficult to spot in tissue, they do not react to normal bacterial tests. There has been no sure way to test for these organisms in living tissue since they are often not a problem until the immune system is exposed to stress. The symptoms are flu-like but to the extreme: headaches, sore joints, rashes, chest pain, heart problems, and neurological disorders. Dementia is common in advanced stages of these gruesome afflictions. (7)
 
The Nicolsons' test is able to identify the presence of mycoplasma in living tissue. The normal way to determine infection is to inject a lab animal with tissue or cultured material and wait for the lab animal to develop the target disease. The Nicolsons claim that a method they have invented named Gene Sequencing seems to do a much better and more accurate job. Labor intensive, thus expensive, Gene Sequencing has been peer reviewed and found to be credible and dependable. Government scientists and the Defense Department refuse to even consider the validity of this approach because if the Nicolsons are correct, and the mycoplasmic infections sickening the Gulf War vets are found to have originated in government funded bio-warfare labs, these programs will be exposed as the dangerous and shortsighted escapades they have become.
 
The USA supplies much of the know how and advanced technology used in this deadly endeavor. Microbiologists from every country study at our universities and learn all the necessary techniques needed to establish successful germ labs. Scientists from the USA were working with Iraq's microbiologists on bio-warfare just weeks before the Gulf War, and Iraq was importing highly toxic bacteria and viruses from companies in the USA. By 1990 they were manufacturing large quantities of botulism toxin and anthrax bacteria.
 
The Army command knew of the possibility that our forces could be exposed to toxic agents while stationed in Iraq; the compulsory inoculations, with multiple vaccines, indicates foreknowledge. But the Command didn't notify the troops about what was about to happen; they were participating in a huge experiment without their informed consent. They still have not been informed and most of the information surrounding the inoculations has been classified, the contents of the vaccines have still to be positively identified. One of the doctors who complained and refused to cooperate because she felt using force was a violation of the Geneva Protocols was court marshaled and given eighteen months in federal prison. (Cool
 
"The nation's historical record on bio-warfare is replete with subterfuge, reckless experimentation, and rogue actions and is punctuated by violations of both domestic policy and international and national norms... the modern record is no more reassuring...If modern biology is to be a tool for human benefit, not the seed of our destruction, then all its facets, including military applications, must be opened to new levels of public understanding and to careful public scrutiny." (9)
 
...
 
These protocols may now be meaningless in an age of new technologies; advances in rDNA and cloning could produce a deadly new agent almost overnight, with relative ease. Recombinant DNA is a process known to most biologists and is easily accomplished in well equipped labs. Bacteria contain plasmids which are tiny pieces of DNA. This DNA is much smaller than, and independent of, the DNA contained in the chromosomes. The plasmids are removed from bacteria and then sliced apart using enzymes. A virus gene that has already been removed from the virus is fitted into the gap in the plasmid. Then this altered plasmid is inserted into a bacterium, where it can perform any number of tasks. As a bio-warfare bacterium the new DNA could manufacture toxins that would poison the body or cause disruptions in vital organs, like the brain. If mycoplasmas were the bacteria used in the transfer, they would be almost impossible to detect. Mycoplasmas have the ability to blend with the cell wall of the host and then move deeply into the nucleus of the cell where they stay hidden, waiting to emerge when the immune system weakens.
 
Mycoplasmas play only a small part in this tragic production. Any virus or bacteria that could cause a disease has or will be, or is now being studied and considered as a possible warfare agent. ...
 
 
End Notes
 
(1) Ivan L. Bennett, Jr., former Deputy Director of the U.S Office of Science and Technology before a symposium on chemical and biological warfare, sponsored by the National Academy of Sciences. Proc. N.A.S. 1970;65:250-279. Taken from Emerging Viruses:AIDS and Ebola.
 
(2) Lee Bowman, America Gets a Taste of Chemical Terror; April 26, 1997 Scripps Howard News Service. A well written news report; one of the few I've read that tries to point out the significant danger of bio-warfare.
 
(3) Dr. Frederick A. Murphy Talks about the Ebola Virus; An Interview by Sean Henahan, Access Excellence: a WWW site that supplies information about emerging diseases and viruses
 
(4)Dr. Garth Nicolson; From a discussion recorded by Gustav Grossman, 7-28-97
 
(5) This is from an interview I conducted, about a year ago, with Dr. Cantwell for my column in the Sonoma County Free Press. Dr. Cantwell has written two books on the genesis of the HIV: AIDS and the Doctors of Death & Queer Blood. Both are excellent. He has also written about the ability of bacteria to cause disease in the Cancer Microbe.
 
(6) This also is well documented information. Michael Gold's Conspiracy of Cells shows clearly the type of scientific errors that can occur on a regular basis, even in well run labs. Another look at scientific Snafus and downright skullduggery is the brilliantly researched Emerging Viruses:AIDS and Ebola, Nature, Accident or Genocide? by Leonard Horowitz. There is no need to distort or fabricate information concerning bio-warfare; the truth is there for all to see.
 
(7) I had previously researched the nature of mycoplasmas and spiroplasmas for an article I wrote on Transmissible Spongiform Encephlopathy : Mad Cows & Mad Scientists; FLATLAND #14. or Sonoma County Free Press. Mycoplasma type organisms are poorly understood, even by most scientists because they are so difficult to culture. They are often ignorantly discounted as the cause of disease. This could prove to be a fatal mistake for us all.
 
(8)From recorded conversations by Gustav Grossman 6-23-96. The Eight Myths of Operation Desert Storm & Gulf War Syndrome by Garth L. Nicolson, Ph.D., and Nancy L. Nicolson, Ph.D. The Institute for Molecular Medicine, P. O. Box 52470, Irvine, California 92619-2470 USA .
 
(9)From the introduction to Gene Wars:Military Control Over the New Genetic Technologies by Charles Piller and Dr. Keith Yamamoto. (10)Much of the above information can be found in Gene Wars . This is an important look at our government's bio-warfare program, the rationale and motives. It is also a plea to their fellow scientists to take a long, hard look at the pitfalls of continuing this dangerous activity. Written in 1986, it predicts clearly the type of problems that might arise, just as they did four years later during the Gulf War. Too bad we didn't listen.
 
Logged
Pages: [1]   Go Up
  Print  
 
Jump to:  

Powered by MySQL Powered by PHP Powered by SMF 1.1.17 | SMF © 2011, Simple Machines Valid XHTML 1.0! Valid CSS!